PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g012750.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YB
Protein Properties Length: 153aa    MW: 17609.1 Da    PI: 6.2306
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g012750.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB166.33.9e-5258151295
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         reqdrf+Pianv+rim+++lP +akis+d+k+t+qecvsefisfvt+ea+++cq e+rkti+++d+lwa++ lGf+dy+epl+ yl++yre
  Solyc11g012750.1.1  58 REQDRFMPIANVIRIMRRILPPHAKISDDSKQTIQECVSEFISFVTGEANERCQCEQRKTITAEDVLWAMSRLGFDDYIEPLTFYLHRYRE 148
                         89***************************************************************************************** PP

               NF-YB  93 leg 95 
                         ++g
  Solyc11g012750.1.1 149 IDG 151
                         987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-4751149IPR009072Histone-fold
SuperFamilySSF471131.43E-3660149IPR009072Histone-fold
PfamPF008086.6E-2563127IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.7E-1691109No hitNo description
PROSITE patternPS00685094110IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.7E-16110128No hitNo description
PRINTSPR006152.7E-16129147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MANLAHIYTL LYFYRAKMDN NGGGFHGYHT FPSTPATEMR MGVPVPVHLN QDSECTIREQ  60
DRFMPIANVI RIMRRILPPH AKISDDSKQT IQECVSEFIS FVTGEANERC QCEQRKTITA  120
EDVLWAMSRL GFDDYIEPLT FYLHRYREID GA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-3856148193NF-YB
4awl_B1e-3856148294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-3856148294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2369480.0Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05SLe0114E01, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250562.21e-113PREDICTED: nuclear transcription factor Y subunit B-6
SwissprotQ84W665e-67NFYB6_ARATH; Nuclear transcription factor Y subunit B-6
TrEMBLK4D6791e-114K4D679_SOLLC; Uncharacterized protein
STRINGSolyc11g012750.1.11e-113(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.13e-68nuclear factor Y, subunit B6
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]